Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
rarB2RarB (conservon) homologue; PMID: 12657469. (138 aa)    
Predicted Functional Partners:
rarD2
RarD (conservon) homologue; PMID: 12657469; conservon; TTA-Leu codon(s) 129 may indicate regulation by BldA.
 
 
 0.909
rarA2
RarA (conservon) homologue; PMID: 12657469; cluster 0205 with SCAB20261 and SCAB79171.
 
     0.815
CBG69780.1
RarD (conservon) homolog; PMID: 12657469; truncated conservon.
 
 
 0.778
CBG69776.1
RarD (conservon) homolog; PMID: 12657469; truncated conservon.
 
 
 0.777
CBG70071.1
RarD (conservon) homolog; PMID: 12657469; related to conservon.
 
 
 0.770
CBG74958.1
RarD (conservon) homolog; PMID: 12657469; partial conservon.
 
 
 0.769
CBG68430.1
RarE (conservon) homolog; PMID: 12657469; partial conservon.
 
 
 0.766
SCAB_4651
RarD (conservon) homolog; PMID: 12657469; partial conservon.
 
 
 0.757
CBG74588.1
RarD (conservon) homolog; PMID: 12657469; truncated conservon.
 
 
 0.754
rarD1
RarD (conservon) homologue; PMID:12657469; conservon.
 
 
 0.753
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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