Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
rarC2RarC (conservon) homologue; PMID: 12657469. (110 aa)    
Predicted Functional Partners:
CBG70315.1
Putative monooxygenase; PMID: 12791134; PMID: 10467127; PMID: 15111132; Belongs to the cytochrome P450 family.
  
  0.815
rarE2
RarE (conservon) homolog; PMID: 12657469; PMID: 15111132; Belongs to the cytochrome P450 family.
  
  0.804
rarD2
RarD (conservon) homologue; PMID: 12657469; conservon; TTA-Leu codon(s) 129 may indicate regulation by BldA.
  
    0.787
rarA2
RarA (conservon) homologue; PMID: 12657469; cluster 0205 with SCAB20261 and SCAB79171.
  
 0.769
rarB2
RarB (conservon) homologue; PMID: 12657469.
     
 0.700
fadB1
Putative fatty acid oxidative multifunctional enzyme.
  
 0.674
CBG69211.1
Fatty acid oxidation complex alpha-subunit.
  
 0.674
CBG70316.1
Conserved hypothetical protein; Doubtful CDS.
       0.506
CBG75221.1
Putative electron transfer flavoprotein, alpha subunit.
  
 
 0.493
CBG75220.1
Putative electron transfer flavoprotein, beta subunit.
  
 
 0.487
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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