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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCAB_3271Putative ABC transporter ATP-binding protein. (319 aa)    
Predicted Functional Partners:
SCAB_3261
Putative integral membrane transport protein.
  
 0.961
CBG73636.1
Probable ABC-transporter transmembrane subunit; PMID:8326867; PMID:15837373; PMID:9696745; PMID:1924314.
  
 0.838
CBG71068.1
Putative ABC transporter transmembrane subunit; TTA-Leu codon(s) 150 may indicate regulation by BldA.
  
 0.836
CBG74239.1
Putative ABC-transporter transmembrane subunit.
 
  
 0.836
CBG75620.1
Putative ABC transport system integral membrane protein.
 
  
 0.830
CBG71588.1
Putative ABC-transporter transmembrane subunit.
   
 0.797
CBG69966.1
Putative ABC transporter, integral membrane subunit; PMID: 8757400.
 
    0.781
SCAB_3291
Putative oxidoreductase; Cluster 0135 collects two pairs: SCAB3291 and SCAB3301, SCAB62911 and SCAB62921.
  
    0.501
SCAB_3301
Putative oxidoreductase; Cluster 0135 collects two pairs: SCAB3291 and SCAB3301, SCAB62911 and SCAB62921.
  
    0.501
SCAB_3281
Putative NRPS-associated AMP-binding protein; PMID:15870461; PMID:16208464; PMID:15113000.
  
    0.500
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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