Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SCAB_3281Putative NRPS-associated AMP-binding protein; PMID:15870461; PMID:16208464; PMID:15113000. (565 aa)    
Predicted Functional Partners:
CBG74925.1
Putative polyketide synthase.
 0.958
CBG73310.1
Putative type I polyketide synthase component; PMID:15217615.
 0.954
CBG74926.1
Putative polyketide synthase; PMID:16207901; PMID:11358695; PMID:9860992; PMID:14736915; many more matches.
 0.952
CBG75341.1
Putative type I polyketide synthase.
 0.948
CBG75343.1
Putative type I polyketide synthase; PMID:16207901; PMID:16079135; PMID:11358695.
 0.942
CBG75339.1
Putative type I polyketide synthase; PMID:16207901; PMID:16085885; PMID:11094342; PMID:14652074; PMID:10873841; PMID:16806745; TTA-Leu codon(s) 962 may indicate regulation by BldA.
 
 0.934
CBG75340.1
Putative type I polyketide synthase.
 
 0.932
CBG75338.1
Putative type I polyketide synthase; PMID: 16207901; PMID:12770825; PMID:15561847.
 0.917
CBG71460.1
Putative polyketide synthase; PMID:14652074; PMID:10767533; many ~30% similar.
 
0.914
txtB
Thaxtomin synthetase B; PMID: 11115114; PMID: 15686551; PMID: 10780924; thaxtomin synthesis - pathogenicity associated.
 
 0.910
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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