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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCAB_3301Putative oxidoreductase; Cluster 0135 collects two pairs: SCAB3291 and SCAB3301, SCAB62911 and SCAB62921. (570 aa)    
Predicted Functional Partners:
SCAB_3281
Putative NRPS-associated AMP-binding protein; PMID:15870461; PMID:16208464; PMID:15113000.
 
  
 0.939
SCAB_3291
Putative oxidoreductase; Cluster 0135 collects two pairs: SCAB3291 and SCAB3301, SCAB62911 and SCAB62921.
 
   
0.872
CBG69211.1
Fatty acid oxidation complex alpha-subunit.
  
 0.815
SCAB_3321
Putative non-ribosomal peptide synthetase; PMID:10801488; PMID:9006024; PMID:16647040; PMID:9427658.
    
 0.799
SCAB_3251
Putative oxidoreductase.
  
  
 0.760
SCAB_3241
Putative thioesterase; PMID:15112993; PMID:10473585; many matches in secondary metabolite biosynthesis.
     
 0.757
acdH
acyl-CoA dehydrogenase.
  
     0.755
CBG75346.1
Putative methoxymalonate biosynthesis protein; PMID:16207901; PMID:16085885; PMID:12060743.
  
     0.755
CBG71602.1
Putative acyl-CoA dehydrogenase.
  
     0.754
CBG72217.1
Putative oxidoreductase.
  
     0.739
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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