Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBG70423.1Conserved hypothetical protein. (1192 aa)    
Predicted Functional Partners:
SCAB_3941
Putative ArsR-family transcriptional regulator.
  
     0.712
CBG74534.1
Conserved hypothetical protein.
  
     0.671
CBG70421.1
Putative transposase subunit; PMID: 8973350.
       0.634
CBG70422.1
Putative integrase core domain; PMID:12127493.
       0.634
CBG69004.1
Putative secreted protein; No full-length matches in db.
 
     0.538
CBG74708.1
Putative secreted protein; No full-length matches in db.
  
     0.525
nhaA
Putative sodium/proton antiporter; Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons; Belongs to the NhaA Na(+)/H(+) (TC 2.A.33) antiporter family.
   
    0.503
CBG72083.1
Putative trehalose phosphatase; Removes the phosphate from trehalose 6-phosphate to produce free trehalose.
   
    0.503
CBG75014.1
Conserved hypothetical protein.
 
     0.465
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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