STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCAB_3371Putative transposase; Cluster 0025 8: SCAB3371, SCAB4481, SCAB7601, SCAB11701, SCAB20281, SCAB40511, SCAB68181. (304 aa)    
Predicted Functional Partners:
SCAB_3361
Putative NT-sugar reductase; PMID:16723573; PMID:15112997; PMID:9353926; PMID:10972798; PMID:10767533.
       0.557
CBG68250.1
Putative transposase; PMID:1847988; PMID:11985710; PMID:7961479; PMID:8088548; PMID:15686551; see also SCAB90021; TTA-Leu codon(s) 87 may indicate regulation by BldA.
  
     0.494
CBG70426.1
Conserved hypothetical protein.
  
     0.472
CBG72031.1
Conserved hypothetical protein.
  
     0.465
CBG72046.1
Conserved hypothetical protein.
  
     0.444
CBG71312.1
Conserved hypothetical protein.
  
     0.440
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.