Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CBG70484.1Conserved hypothetical protein. (334 aa)    
Predicted Functional Partners:
CBG70483.1
Putative sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
 
     0.831
CBG69638.1
Putative large Pro/Ala/Gly-rich protein.
 
     0.682
SCAB_42841
Conserved hypothetical protein (fragment).
  
     0.617
CBG72932.1
Putative integral membrane protein.
  
     0.601
CBG75526.1
Conserved hypothetical protein; TTA-Leu codon(s) 11 may indicate regulation by BldA.
  
     0.600
CBG74451.1
Putative integral membrane protein; PMID:12608576.
  
  
 0.592
CBG75746.1
Putative leucine-rich repeat protein.
  
     0.582
CBG68524.1
Putative regulatory protein.
  
  
 0.579
CBG71229.1
Putative integral membrane protein.
  
     0.575
CBG69059.1
Putative cellulose-binding protein.
  
    0.571
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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