SCAB_3441 protein (Streptomyces scabiei) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SCAB_3441

TfxG-like protein; PMID:8509324. (233 aa)

Predicted Functional Partners:

gcp

0.874

adk-2

0.651

SCAB_3451

0.590

SCAB_3461

0.590

CBG75670.1

0.402

Your Current Organism:

Streptomyces scabiei

NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBG75670.1	SCAB_3441	SCAB_87311	SCAB_3441	Putative phosphotransferase.	TfxG-like protein; PMID:8509324.	0.402
SCAB_3441	CBG75670.1	SCAB_3441	SCAB_87311	TfxG-like protein; PMID:8509324.	Putative phosphotransferase.	0.402
SCAB_3441	SCAB_3451	SCAB_3441	SCAB_3451	TfxG-like protein; PMID:8509324.	Conserved hypothetical protein.	0.590
SCAB_3441	SCAB_3461	SCAB_3441	SCAB_3461	TfxG-like protein; PMID:8509324.	Putative membrane protein; No significant db matches.	0.590
SCAB_3441	adk-2	SCAB_3441	SCAB_3431	TfxG-like protein; PMID:8509324.	Putative adenylate kinase (fragment); Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family.	0.651
SCAB_3441	gcp	SCAB_3441	SCAB_36461	TfxG-like protein; PMID:8509324.	Putative O-sialoglycoprotein endopeptidase; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.	0.874
SCAB_3451	SCAB_3441	SCAB_3451	SCAB_3441	Conserved hypothetical protein.	TfxG-like protein; PMID:8509324.	0.590
SCAB_3451	SCAB_3461	SCAB_3451	SCAB_3461	Conserved hypothetical protein.	Putative membrane protein; No significant db matches.	0.790
SCAB_3451	adk-2	SCAB_3451	SCAB_3431	Conserved hypothetical protein.	Putative adenylate kinase (fragment); Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family.	0.503
SCAB_3461	SCAB_3441	SCAB_3461	SCAB_3441	Putative membrane protein; No significant db matches.	TfxG-like protein; PMID:8509324.	0.590
SCAB_3461	SCAB_3451	SCAB_3461	SCAB_3451	Putative membrane protein; No significant db matches.	Conserved hypothetical protein.	0.790
SCAB_3461	adk-2	SCAB_3461	SCAB_3431	Putative membrane protein; No significant db matches.	Putative adenylate kinase (fragment); Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family.	0.503
adk-2	SCAB_3441	SCAB_3431	SCAB_3441	Putative adenylate kinase (fragment); Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family.	TfxG-like protein; PMID:8509324.	0.651
adk-2	SCAB_3451	SCAB_3431	SCAB_3451	Putative adenylate kinase (fragment); Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family.	Conserved hypothetical protein.	0.503
adk-2	SCAB_3461	SCAB_3431	SCAB_3461	Putative adenylate kinase (fragment); Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family.	Putative membrane protein; No significant db matches.	0.503
gcp	SCAB_3441	SCAB_36461	SCAB_3441	Putative O-sialoglycoprotein endopeptidase; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.	TfxG-like protein; PMID:8509324.	0.874