Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CBG70576.1Putative Psp-like protein. (66 aa)    
Predicted Functional Partners:
CBG73717.1
Conserved hypothetical protein; PF04012 may indicate sigma-54-regulator function.
  
 
 0.875
CBG75927.1
Putative two-component sensor kinase.
   
 
 0.807
SCAB_0821
Conserved hypothetical protein; PAS domain may indicate role in signal detection.
   
 
 0.801
CBG70575.1
Conserved hypothetical protein.
       0.749
afsQ2
Two component system sensor kinase; PMID: 1339426.
  
   0.719
CBG70574.1
Putative lipoprotein.
       0.672
afsQ1
Two component system response regulator; PMID: 1339426.
  
  
 0.664
CBG71683.1
Putative membrane protein.
  
  
 0.658
CBG70571.1
Putative sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
    0.590
CBG69622.1
Putative sensory histidine kinase.
  
 
 0.479
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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