Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CBG70607.1Putative peptidoglycan binding protein. (311 aa)    
Predicted Functional Partners:
CBG71665.1
Conserved hypothetical protein.
 
    0.775
CBG71664.1
Conserved hypothetical protein.
  
   
 0.772
CBG75170.1
Putative membrane protein.
  
     0.724
CBG73717.1
Conserved hypothetical protein; PF04012 may indicate sigma-54-regulator function.
  
     0.634
CBG69788.1
Putative membrane protein.
  
     0.626
SCAB_3941
Putative ArsR-family transcriptional regulator.
  
     0.585
CBG69414.1
Putative membrane protein.
  
     0.584
CBG73718.1
Conserved hypothetical protein.
  
     0.582
CBG70180.1
Putative ATP-dependent DNA helicase; Belongs to the helicase family. UvrD subfamily.
 
     0.575
CBG70669.1
Conserved hypothetical protein.
  
    0.551
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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