STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBG70611.1Putative sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (232 aa)    
Predicted Functional Partners:
CBG70610.1
Putative membrane protein.
       0.874
CBG70612.1
Conserved hypothetical protein.
       0.744
CBG70609.1
Putative sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
 
    
0.722
CBG71654.1
Putative sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.719
CBG70608.1
Putative membrane protein.
       0.702
CBG71522.1
Putative sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.700
CBG68330.1
Putative sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.680
CBG74063.1
Putative sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.677
SCAB_4351
Putative sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.675
CBG72616.1
Putative sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.657
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.