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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBG70612.1Conserved hypothetical protein. (154 aa)    
Predicted Functional Partners:
CBG70613.1
Conserved hypothetical protein.
       0.762
CBG70611.1
Putative sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
       0.755
CBG70614.1
Conserved hypothetical protein.
       0.702
CBG70610.1
Putative membrane protein.
       0.614
CBG70616.1
Putative secreted glycosylhydrolase.
       0.542
CBG70615.1
Putative membrane protein.
       0.478
CBG70617.1
Putative secreted protein.
       0.450
CBG70608.1
Putative membrane protein.
       0.439
CBG70609.1
Putative sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
       0.439
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.