Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CBG70615.1Putative membrane protein. (238 aa)    
Predicted Functional Partners:
CBG70614.1
Conserved hypothetical protein.
       0.776
CBG70613.1
Conserved hypothetical protein.
       0.670
CBG74183.1
Conserved hypothetical protein.
  
     0.541
CBG71298.1
Conserved hypothetical protein.
  
     0.538
CBG70616.1
Putative secreted glycosylhydrolase.
       0.526
CBG70617.1
Putative secreted protein.
       0.526
CBG70612.1
Conserved hypothetical protein.
       0.484
CBG75015.1
Conserved hypothetical protein.
  
     0.450
CBG70619.1
Putative succinate dehydrogenase membrane subunit.
 
    0.441
CBG70618.1
Putative succinate dehydrogenase membrane subunit.
 
    0.432
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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