STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBG70618.1Putative succinate dehydrogenase membrane subunit. (110 aa)    
Predicted Functional Partners:
CBG70619.1
Putative succinate dehydrogenase membrane subunit.
 
 0.999
dhsA
Putative succinate dehydrogenase flavoprotein subunit.
 
 0.999
dhsB
Putative succinate dehydrogenase iron-sulfur subunit; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.
 
 0.999
CBG68314.1
Putative reductase iron-sulfur protein.
  
 0.997
CBG70261.1
Putative succinate dehydrogenase iron-sulfur subunit.
  
 0.997
CBG70260.1
Putative succinate dehydrogenase flavoprotein subunit.
 
 0.996
CBG68315.1
Putative reductase flavoprotein subunit.
  
 0.995
fumB
Fumarate hydratase class I; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
  
 
 0.990
CBG70875.1
Putative oxidoreductase.
  
 0.954
CBG73349.1
Putative oxidoreductase.
  
 0.954
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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