Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SCAB_3531Conserved hypothetical protein. (174 aa)    
Predicted Functional Partners:
SCAB_3541
Conserved hypothetical protein.
 
     0.806
SCAB_1481
Putative non-ribosomal peptide synthase component.
  
 
 0.579
CBG71460.1
Putative polyketide synthase; PMID:14652074; PMID:10767533; many ~30% similar.
  
 
 0.497
CBG74925.1
Putative polyketide synthase.
  
 
 0.468
CBG75341.1
Putative type I polyketide synthase.
  
 
 0.468
purA
Adenylosuccinate synthase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.
  
  
 0.461
txtB
Thaxtomin synthetase B; PMID: 11115114; PMID: 15686551; PMID: 10780924; thaxtomin synthesis - pathogenicity associated.
  
 
 0.456
txtA
PMID: 11115114; PMID: 15686551; thaxtomin synthesis - pathogenicity associated.
  
 
 0.456
CBG68372.1
Putative isochorismatase; PMID:11591691; PMID:11029592; PMID:8550523; PMID:2521622.
  
 
 0.434
CBG75343.1
Putative type I polyketide synthase; PMID:16207901; PMID:16079135; PMID:11358695.
  
 
 0.412
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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