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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCAB_3541Conserved hypothetical protein. (156 aa)    
Predicted Functional Partners:
SCAB_3531
Conserved hypothetical protein.
 
     0.813
CBG71492.1
Conserved hypothetical protein.
  
     0.746
CBG73274.1
Putative DNA-binding protein.
  
     0.741
SCAB_4301
Putative DNA-binding protein.
  
     0.734
SCAB_3381
Conserved hypothetical protein.
  
     0.719
CBG73521.1
Conserved hypothetical protein.
  
     0.717
CBG75909.1
Conserved hypothetical protein.
  
     0.691
CBG70844.1
Putative transcriptional regulator.
  
     0.673
CBG69741.1
Putative regulator.
  
     0.648
CBG72745.1
Putative membrane protein.
       0.542
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.