Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBG70640.1Conserved hypothetical protein. (115 aa)    
Predicted Functional Partners:
CBG70958.1
Conserved hypothetical protein.
 
 
 0.811
CBG70487.1
Conserved hypothetical protein.
  
   0.778
CBG72508.1
Putative regulator of Sig15.
  
   0.768
CBG72735.1
Conserved hypothetical protein; PMID:15313224.
  
   0.765
CBG70296.1
Conserved hypothetical protein; Lantibiotics biosynthesis.
  
   0.731
CBG69156.1
Putative ATP-binding protein; TTA-Leu codon(s) 13 may indicate regulation by BldA.
 
 
 0.711
CBG72198.1
Putative DNA-binding protein.
  
    0.680
CBG70039.1
Conserved hypothetical protein.
  
     0.679
CBG69054.1
Putative regulatory protein.
 
 
 0.668
CBG70015.1
Conserved hypothetical protein.
  
     0.657
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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