Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CBG70650.1Putative RNA ligase. (227 aa)    
Predicted Functional Partners:
trpS2
tryptophanyl-tRNA synthetase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.
     
 0.766
CBG70652.1
Putative sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
       0.683
CBG70653.1
Conserved hypothetical protein.
       0.683
CBG71249.1
Conserved hypothetical protein.
  
     0.589
CBG74119.1
Conserved hypothetical protein.
  
     0.589
CBG69172.1
Conserved hypothetical protein.
  
     0.578
CBG71790.1
Conserved hypothetical protein.
  
     0.573
CBG72531.1
Conserved hypothetical protein.
  
     0.540
CBG74120.1
Putative integral membrane protein.
  
     0.527
CBG70645.1
Putative integral membrane protein.
       0.526
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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