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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCAB_3571GntR-family transcriptional regulator. (231 aa)    
Predicted Functional Partners:
CBG69051.1
Putative GntR family transcriptional regulator.
  
     0.772
CBG75374.1
Putative GntR-famly transcriptional regulator.
  
  
 0.766
SCAB_6591
GntR-family transcriptional regulator.
  
  
 0.760
CBG69557.1
Sporulation transcription factor, WhiH.
  
  
 0.756
pdhR
Pyruvate dehydrogenase complex repressor.
  
  
 0.746
CBG74577.1
Putative GntR-family transcriptional regulator.
  
     0.713
CBG75854.1
Putative GntR family transcriptional regulator.
  
  
 0.650
CBG74285.1
Putative transcriptional regulator.
  
  
 0.561
soxB
Putative sarcosine oxidase beta subunit.
  
  
 0.553
soxG
Putative sarcosine oxidase gamma subunit.
       0.542
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.