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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBG70693.1Putative oxidoreductase. (160 aa)    
Predicted Functional Partners:
gltB
Putative Ferredoxin-dependent glutamate synthase 1; PMID:7727752.
     
 0.600
desF
Putative secreted protein DesF; PMID: 15600304; maybe involved in siderophore transport.
  
    0.574
CBG75490.1
Putative secreted siderophore-binding lipoprotein (transport system associated); Maybe siderophore transport system.
  
    0.574
SCAB_9831
Putative iron transport lipoprotein.
  
    0.574
CBG73623.1
Putative membrane protein.
   
    0.547
CBG70690.1
Putative integral membrane protein.
       0.542
CBG73860.1
Conserved hypothetical protein.
       0.542
CBG70692.1
Putative aldolase.
       0.537
CBG69114.1
Conserved hypothetical protein.
  
     0.446
CBG70700.1
Putative integral membrane protein.
  
     0.427
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.