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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBG70698.1Putative aldehyde dehydrogenase family protein; Belongs to the aldehyde dehydrogenase family. (551 aa)    
Predicted Functional Partners:
gabT
Putative 4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
 0.921
CBG74891.1
Putative aminotransferase (fragment); Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
 0.921
CBG68932.1
Hypothetical protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
 0.920
gabD-2
Succinate-semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
  
 
0.919
CBG74830.1
Putative aldehyde dehydrogenase.
  
  
 
0.918
CBG70697.1
Putative oxidoreductase; PMID: 12183628.
 
  
 0.863
CBG70083.1
Putative 2-oxoglutarate dehydrogenase.
  
 0.859
citA
Citrate synthase; PMID:11325948; see also SCAB51341 putative citrate synthase; Belongs to the citrate synthase family.
  
 0.858
CBG72176.1
Putative citrate synthase; See also SCAB58791 citA; Belongs to the citrate synthase family.
  
 0.855
CBG70842.1
Putative oxidoreductase; PMID: 15328113.
   
 0.835
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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