Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
SCAB_3701Putative hypothetical protein (fragment). (480 aa)    
Predicted Functional Partners:
CBG74925.1
Putative polyketide synthase.
  
 
 0.773
CBG68821.1
Putative respiratory chain oxidoreductase; TTA-Leu codon(s) 59 may indicate regulation by BldA.
   
   0.764
SCAB_3721
Putative hypothetical protein (fragment).
  
     0.750
CBG75341.1
Putative type I polyketide synthase.
    
 0.743
CBG68446.1
Conserved hypothetical protein; PMID:15123265.
   
 
 0.720
CBG71846.1
4.1.7.
  
     0.675
CBG69237.1
Putative helicase SNF2 family protein; Cluster 0487 with SCAB65921.
    
 0.603
CBG73592.1
Putative helicase SNF2 family protein; Cluster 0487 with SCAB21231.
    
 0.603
SCAB_3711
Hypothetical protein; No significant db matches.
       0.601
SCAB_9921
Putative secreted protein.
  
     0.596
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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