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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCAB_3771Putative ABC transporter integral membrane protein. (343 aa)    
Predicted Functional Partners:
SCAB_3761
Putative oligopeptide transport system (integral membrane and ATP-binding proteins).
 
 
 0.989
SCAB_3751
Putative ABC transport ATP-binding subunit.
 
 
 0.968
CBG75592.1
Putative oligopeptide transport system (integral membrane and ATP-binding proteins); Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.955
SCAB_3791
Putative oligopeptide ABC transporter, substrate-binding lipoprotein.
 
 
 0.950
CBG69840.1
Putative oligopeptide ABC transporter; Belongs to the ABC transporter superfamily.
 
 0.872
CBG70243.1
Putative transport system substrate-binding protein.
  
 0.872
CBG69841.1
Putative oligopeptide ABC transporter component; Belongs to the ABC transporter superfamily.
 
 
 0.867
CBG70242.1
Putative oligopeptide ABC transporter; Belongs to the ABC transporter superfamily.
 
 
 0.867
bldKD
BldKD putative oligopeptide ABC transporter subunit; PMID: 8971710; PMID: 16006069; Belongs to the ABC transporter superfamily.
 
 
 0.867
CBG69844.1
Oligopeptide transport integral membrane protein.
  
 0.865
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.