Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CBG71000.1Putative hydrolase. (214 aa)    
Predicted Functional Partners:
CBG70998.1
Putative acetoin utilization protein.
  
  
 0.806
CBG68197.1
Conserved hypothetical protein.
  
    0.803
CBG70997.1
Conserved hypothetical protein.
       0.687
CBG70999.1
Putative major facilitator transporter.
  
    0.665
CBG70996.1
Putative DNA-binding protein.
       0.644
CBG70995.1
Putative epimerase.
  
  
 0.542
CBG70994.1
Putative acyltransferase.
       0.526
CBG75350.1
Putative NDP-hexose 3-ketoreductase; PMID:16207901; PMID:11358695; PMID:16632249; PMID:9831526.
 
   
 0.462
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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