STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBG71104.1Conserved hypothetical protein. (851 aa)    
Predicted Functional Partners:
CBG73592.1
Putative helicase SNF2 family protein; Cluster 0487 with SCAB21231.
 
 0.742
CBG69237.1
Putative helicase SNF2 family protein; Cluster 0487 with SCAB65921.
 
 0.740
CBG68784.1
Putative WD-40 repeat protein.
  
     0.666
CBG70438.1
Conserved hypothetical protein.
 
 0.658
CBG70677.1
Conserved hypothetical protein.
    
 0.604
SCAB_3601
Putative WD-40 repeat protein.
  
     0.577
CBG70998.1
Putative acetoin utilization protein.
   
 0.559
CBG73595.1
Conserved hypothetical protein; No full length matches.
 
     0.558
alaS
Alanine tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
  
 0.557
rpmD
50S ribosomal protein L30.
   
  0.531
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.