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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCAB_4071Conserved hypothetical protein. (256 aa)    
Predicted Functional Partners:
SCAB_4061
Conserved hypothetical protein.
     0.994
SCAB_4051
Putative glycosyltransferase.
 
    0.967
SCAB_4031
Putative histidine kinase.
 
     0.868
CBG68193.1
Putative epimerase/dehydratase.
 
   
 0.809
SCAB_4021
Putative epimerase.
 
   
 0.809
SCAB_4081
Putative membrane protein.
 
    0.785
SCAB_4041
Putative response regulator.
       0.769
CBG68195.1
Putative integral membrane protein.
 
     0.760
SCAB_4091
Putative integral membrane protein.
 
     0.751
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.