Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
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[Homology]
Score
SCAB_4091Putative integral membrane protein. (440 aa)    
Predicted Functional Partners:
SCAB_4081
Putative membrane protein.
 
     0.892
SCAB_4061
Conserved hypothetical protein.
 
   
 0.818
SCAB_4021
Putative epimerase.
 
  
 0.803
CBG68193.1
Putative epimerase/dehydratase.
 
  
 0.794
SCAB_4051
Putative glycosyltransferase.
 
   
 0.785
SCAB_4071
Conserved hypothetical protein.
 
     0.740
engA
Putative GTPase; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
   
    0.626
SCAB_0711
Putative LuxR-family regulator; PMID:12819191.
  
     0.485
CBG69568.1
Conserved hypothetical protein.
  
     0.477
CBG72945.1
Putative ATP-binding protein.
   
    0.469
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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