Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CBG71183.1Putative integrase. (611 aa)    
Predicted Functional Partners:
CBG71182.1
Hypothetical protein.
       0.803
CBG74186.1
Putative secreted prephenate dehydrogenase/chorismate mutase; PMID:12060705; PMID:10770754; PMID:12480894; Cterm duplicated twice downstream: see SCAB71961 and SCAB71971.
  
    0.770
CBG72561.1
Conserved hypothetical protein.
   
    0.769
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
   
    0.769
whiA
WhiA protein required for sporulation; Involved in cell division and chromosome segregation.
  
    0.767
CBG70144.1
Conserved hypothetical protein; Belongs to the SOS response-associated peptidase family.
   
    0.764
CBG71185.1
Putative phage integrase.
 
     0.712
SCAB_4131
Conserved hypothetical protein; PAS domain may indicate role in signal detection.
   
    0.668
CBG71184.1
Hypothetical protein.
       0.566
CBG69294.1
Putative mobilisation relaxase component; PMID: 12584005; cluster 0122: SCAB21791, SCAB32311, SCAB48651, SCAB52671.
  
  
 0.534
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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