Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SCAB_4121Conserved hypothetical protein. (152 aa)    
Predicted Functional Partners:
mdh
Malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 2 family.
   
    0.788
SCAB_4181
Putative luxR family two-component response regulator.
     
 0.523
SCAB_4111
Putative integral membrane protein.
 
     0.516
CBG73901.1
Conserved hypothetical protein.
   
    0.493
CBG68229.1
Conserved hypothetical protein.
  
  
 0.490
SCAB_4131
Conserved hypothetical protein; PAS domain may indicate role in signal detection.
       0.485
CBG68237.1
Putative stress-inducible protein.
 
  
 0.475
CBG68232.1
Putative membrane protein SCJ1.26.
 
  
 0.471
CBG68268.1
Putative transcriptional regulator.
 
     0.455
CBG75194.1
Putative membrane protein.
 
  
 0.410
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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