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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCAB_4121Conserved hypothetical protein. (152 aa)    
Predicted Functional Partners:
mdh
Malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 2 family.
   
    0.818
SCAB_4181
Putative luxR family two-component response regulator.
     
 0.531
SCAB_4111
Putative integral membrane protein.
 
     0.516
SCAB_4131
Conserved hypothetical protein; PAS domain may indicate role in signal detection.
       0.485
CBG73901.1
Conserved hypothetical protein.
   
    0.470
CBG68232.1
Putative membrane protein SCJ1.26.
 
    0.465
CBG68268.1
Putative transcriptional regulator.
 
   
 0.463
CBG68237.1
Putative stress-inducible protein.
 
  
 0.447
CBG68229.1
Conserved hypothetical protein.
  
  
 0.443
CBG68203.1
Putative DNA-binding protein.
 
    
0.432
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.