Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
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[Homology]
Score
CBG71224.1Putative membrane protein. (238 aa)    
Predicted Functional Partners:
CBG71225.1
Putative transporter.
 
  
 0.968
CBG73256.1
Putative integral membrane protein.
 
  
 0.866
CBG72884.1
Putative integral membrane protein.
  
     0.535
CBG71228.1
Putative potassium ion transporter; TTA-Leu codon(s) 368 may indicate regulation by BldA.
       0.526
CBG69933.1
Putative TetR-family regulator.
  
     0.517
rpmF
Putative 50S ribosomal protein; Belongs to the bacterial ribosomal protein bL32 family.
       0.504
CBG72108.1
Conserved hypothetical protein.
  
     0.423
CBG74451.1
Putative integral membrane protein; PMID:12608576.
  
     0.422
CBG72882.1
Ftsk/SpoIIIE family protein; PMID: 15870461.
  
     0.420
CBG69183.1
Conserved hypothetical protein (fragment).
  
     0.419
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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