STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBG71228.1Putative potassium ion transporter; TTA-Leu codon(s) 368 may indicate regulation by BldA. (644 aa)    
Predicted Functional Partners:
CBG69949.1
Putative large Ala/Glu-rich protein.
 
     0.658
CBG71604.1
Conserved hypothetical protein.
  
     0.655
CBG70993.1
Putative membrane protein.
  
     0.640
CBG72179.1
Conserved hypothetical protein; PAS domain may indicate role in signal detection.
 
    0.608
CBG70188.1
Conserved hypothetical protein.
  
     0.598
CBG75188.1
Putative integral membrane protein.
 
     0.594
CBG71764.1
Putative bifunctional sensor kinase/response regulator.
  
   
 0.591
CBG70531.1
Putative DNA-binding protein.
  
     0.572
CBG74327.1
Putative ferredoxin.
  
   
 0.556
CBG71234.1
Putative membrane protein.
  
     0.547
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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