Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBG71230.1Putative sigma factor; PMID: 16085885; Belongs to the sigma-70 factor family. ECF subfamily. (213 aa)    
Predicted Functional Partners:
CBG75029.1
Putative sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.789
CBG75457.1
Putative sigma factor; Cluster 0758 with SCAB5471; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.757
CBG70571.1
Putative sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.712
litS
Putative sigma factor; PMID:15716454; cluster 0758 with SCAB85121; carotenoid pigment gene cluster; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.707
CBG68257.1
Putative sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.672
sigR
Putative oxidative stress sigma factor; PMID: 10428967; PMID: 9755177; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
0.608
sigE
SigE-like sigma factor; PMID:11342219; PMID: 9004230; S1 and characterisation, PMID:11342219; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.607
CBG71654.1
Putative sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
0.607
SCAB_47081
Conserved hypothetical protein (fragment); Pseudo missing stop codon - gene fragment; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.601
CBG70711.1
Putative sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.598
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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