Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SCAB_4161Conserved hypothetical protein. (107 aa)    
Predicted Functional Partners:
SCAB_4151
Conserved hypothetical protein.
 
     0.970
SCAB_4141
Putative integral membrane protein.
 
     0.901
CBG75121.1
Putative integral membrane protein.
 
     0.747
CBG71541.1
Putative integral membrane protein.
 
     0.741
CBG75122.1
Putative integral membrane protein.
 
     0.736
CBG71538.1
Putative integral membrane protein.
 
     0.685
CBG71946.1
Putative integral membrane protein.
 
     0.674
CBG72100.1
Putative integral membrane protein.
  
     0.646
CBG70700.1
Putative integral membrane protein.
 
     0.561
SCAB_4581
Conserved hypothetical protein.
  
     0.526
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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