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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBG71272.1Conserved hypothetical protein. (177 aa)    
Predicted Functional Partners:
CBG71273.1
Putative ABC transporter ATP-binding subunit.
 
     0.809
CBG71274.1
Putative ABC transporter transmembrane subunit.
 
     0.763
CBG72877.1
Putative regulatory protein; PMID:2253887; PMID:16207901; PMID:12822997; PMID:15921897.
  
    0.441
SCAB_3941
Putative ArsR-family transcriptional regulator.
  
    0.433
CBG73211.1
Putative AfsR-like regulatory protein; PMID:10517581; PMID:15921897; PMID:2253887.
  
     0.422
SCAB_3121
Conserved hypothetical protein.
  
    0.420
CBG69166.1
Putative AfsR-family transcriptional regulator; PMID:14702401; PMID:15113000; PMID:10517581; Possible tandem/partial duplication downstream.
  
     0.412
CBG69167.1
Putative AfsR-family transcriptional regulator; Possible tandem/partial duplication from upstream CDS.
  
     0.406
CBG75875.1
Conserved hypothetical protein.
  
     0.401
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.