Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SCAB_4261Putative sulfate ABC transport system, transmembrane component. (578 aa)    
Predicted Functional Partners:
CBG68446.1
Conserved hypothetical protein; PMID:15123265.
   
 
 0.615
CBG74925.1
Putative polyketide synthase.
   
 
 0.543
CBG75341.1
Putative type I polyketide synthase.
   
 
 0.543
CBG75342.1
Putative type I polyketide synthase.
   
 
 0.522
qcrB
Cytochrome B subunit.
    
 
 0.513
SCAB_4241
Conserved hypothetical protein.
 
  
 0.469
SCAB_4271
Putative possible regulator protein.
  
  
 0.469
CBG71692.1
Putative phosphoesterase.
  
   0.442
sbcD
Putative exonuclease; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.
  
   0.442
SCAB_4221
Conserved hypothetical protein.
 
  
 0.430
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
Server load: low (10%) [HD]