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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBG71357.1Putative transposase fragment; Probably pseudo: fragment. See also SCAB0401, SCAB14521, SCAB40521. (150 aa)    
Predicted Functional Partners:
CBG71363.1
Putative transposase (fragment).
 
     0.906
SCAB_14531
Putative transposase; PMID: 12791134; pseudo: frameshift after codon 165. See also SCAB0401, SCAB40521, SCAB42871.
 
     0.834
CBG69447.1
Putative membrane-located undecaprenyl-phosphate transferase; PMID:12644223; PMID:12825356.
  
  
 0.814
CBG72933.1
Putative sugar transferase.
  
  
 0.814
CBG71362.1
Putative transposase (fragment).
 
     0.786
CBG68488.1
Hypothetical protein.
 
     0.774
CBG68489.1
Conserved hypothetical protein; PMID: 12791134.
  
     0.774
CBG69450.1
Putative membrane-located polysaccharide biosynthesis protein; PMID:12644223; PMID:12825356.
  
 
 0.520
CBG69451.1
Putative membrane-located polysaccharide biosynthesis protein; PMID:12644223; PMID:12825356.
  
 
 0.520
CBG71356.1
Conserved hypothetical protein.
       0.509
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.