STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBG71378.1Putative secreted protein. (884 aa)    
Predicted Functional Partners:
CBG70726.1
Putative xylanase/cellulase; PMID: 12876348; PMID: 9251186.
 
 
 0.797
SCAB_6021
Putative glycosyl hydrolase.
  
     0.751
CBG70792.1
Putative secreted cellulase/xylanase.
  
     0.740
xlnA
Xylanase A.
  
     0.737
tomA
Putative tomatinase; PMID: 15686551; PMID:16255248; PMID:9251186; pathogenicity.
  
     0.699
CBG75198.1
Putative poly(3-hydroxyalkanoate) depolymerase C precursor.
 
 
 0.695
CBG69663.1
Putative secreted sugar hydrolase; Belongs to the glycosyl hydrolase 12 (cellulase H) family.
 
   0.632
xlnB
Putative secreted endo-1,4-beta-xylanase B (xylanase B); PMID:7533741; PMID:1743521; PMID:15650852; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
 
     0.620
CBG75944.1
Putative secreted cellulase; Belongs to the glycosyl hydrolase family 6.
 
   0.597
amlB
Secreted alpha-amylase; PMID:8486279; PMID:9495007; PMID:3266752; PMID:3500166; PMID:1900915.
  
     0.595
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.