Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBG71384.1Conserved hypothetical protein. (158 aa)    
Predicted Functional Partners:
SCAB_9091
Putative integral membrane protein.
 
    0.853
CBG71144.1
Conserved hypothetical protein.
  
  
 0.799
CBG72780.1
Conserved hypothetical protein.
  
    0.780
CBG73582.1
Conserved hypothetical protein.
  
    0.780
CBG72911.1
Conserved hypothetical protein; PMID: 9226270; perhaps derived from Iol operon in common ancestor with B. subtilis.
   
    0.767
SCAB_5521
Conserved hypothetical protein.
 
     0.735
CBG71383.1
Conserved hypothetical protein.
 
     0.711
CBG68337.1
Putative transposase; PMID: 12127493; see also SCAB15851, SCAB73571.
  
    0.699
CBG68727.1
Putative transposase; PMID:12127493; see also SCAB11691, SCAB73571.
  
    0.699
CBG74342.1
Putative transposase; PMID:12127493; see also SCAB11691, SCAB15851.
  
    0.699
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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