Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBG71411.1Conserved hypothetical protein. (315 aa)    
Predicted Functional Partners:
CBG75156.1
Conserved hypothetical protein.
  
     0.718
CBG75153.1
Conserved hypothetical protein.
  
     0.712
CBG75746.1
Putative leucine-rich repeat protein.
  
     0.708
CBG75154.1
Conserved hypothetical protein.
  
    0.695
SCAB_7371
Hypothetical protein; No significant db matches.
  
     0.687
CBG71921.1
Putative DNA-binding protein; TTA-Leu codon(s) 24 may indicate regulation by BldA.
  
     0.644
CBG68769.1
Conserved hypothetical protein.
  
     0.622
CBG71973.1
Putative membrane protein.
  
     0.622
CBG68363.1
Conserved hypothetical protein.
  
     0.610
CBG70981.1
Conserved hypothetical protein.
  
     0.594
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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