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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBG71538.1Putative integral membrane protein. (339 aa)    
Predicted Functional Partners:
SCAB_4161
Conserved hypothetical protein.
 
     0.691
SCAB_4151
Conserved hypothetical protein.
 
     0.672
CBG71541.1
Putative integral membrane protein.
 
     0.668
CBG75122.1
Putative integral membrane protein.
 
     0.645
CBG75121.1
Putative integral membrane protein.
 
     0.610
CBG75120.1
Putative integral membrane protein.
 
     0.607
CBG70268.1
Putative membrane protein.
  
     0.551
CBG72100.1
Putative integral membrane protein.
  
     0.517
CBG71537.1
Putative secreted protein.
       0.514
CBG70520.1
Putative membrane protein.
  
     0.472
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.