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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCAB_4491Putative exported protein. (323 aa)    
Predicted Functional Partners:
SCAB_4481
Putative transposase; Cluster 0025 8: SCAB3371, SCAB4481, SCAB7601, SCAB11701, SCAB20281, SCAB40511, SCAB68181.
       0.501
CBG69957.1
Conserved hypothetical protein.
  
     0.481
CBG74548.1
Putative secreted protein.
  
     0.474
SCAB_4501
Putative secreted protein.
  
  
 0.452
CBG75444.1
Conserved hypothetical protein.
 
     0.450
CBG72392.1
Putative detoxifying phosphotransferase.
  
     0.443
CBG73129.1
Putative phage protein; PMID:11123671; PMID:9636706.
  
     0.434
CBG68513.1
Putative glycosyl hydrolase.
  
   
 0.416
SCAB_3181
Putative membrane protein.
  
     0.414
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.