Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
SCAB_4501Putative secreted protein. (1065 aa)    
Predicted Functional Partners:
SCAB_4541
Putative sugar binding protein.
 
     0.757
SCAB_4511
Conserved hypothetical protein.
 
     0.709
CBG71512.1
Putative membrane protein.
  
   0.678
CBG69005.1
Conserved hypothetical protein.
 
    0.611
SCAB_4961
Putative secreted protein; PMID:14762003.
  
     0.596
SCAB_4521
Putative integral membrane transport protein.
 
     0.579
CBG68190.1
Putative secreted glycosidase; PMID:8299175.
  
     0.562
CBG69111.1
Putative secreted glycosylhydrolase.
  
     0.557
SCAB_4531
Putative sugar transport integral membrane protein.
 
     0.534
CBG71425.1
Putative acetyltransferase.
  
    0.525
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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