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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBG71596.1Putative transcriptional regulator. (196 aa)    
Predicted Functional Partners:
CBG71597.1
Putative 3-hydroxyacyl-CoA dehydrogenase.
  
    0.869
CBG71598.1
Putative aldehyde dehydrogenase.
       0.755
paaD
Putative phenylacetic acid degradation protein PaaD.
  
     0.655
paaA
Putative phenylacetic acid degradation protein PaaA.
  
     0.621
paaC
Putative phenylacetic acid degradation protein PaaC.
  
     0.596
CBG75183.1
Putative phenylacetic acid degradation protein PaaB.
 
     0.575
CBG75186.1
Putative phenylacetic acid degradation NADH oxidoreductase PaaE.
 
  
 0.543
SCAB_2681
Putative repressor; PMID:12937892.
  
    0.478
paaK
phenylacetate-CoA ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA).
 
     0.441
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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