Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBG71600.1Putative integral membrane protein. (414 aa)    
Predicted Functional Partners:
CBG71601.1
Putative membrane protein.
 
     0.953
CBG71604.1
Conserved hypothetical protein.
 
     0.798
CBG71973.1
Putative membrane protein.
  
     0.757
CBG71974.1
Putative integral membrane protein.
  
     0.746
CBG74493.1
Conserved hypothetical protein.
  
     0.740
CBG71234.1
Putative membrane protein.
  
     0.736
CBG72353.1
Putative membrane protein.
  
     0.736
CBG70135.1
Conserved hypothetical protein; Cluster 0623 with SCAB65421.
  
     0.733
CBG69949.1
Putative large Ala/Glu-rich protein.
  
     0.729
CBG71014.1
Alanine-rich hypothetical protein.
  
     0.723
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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