Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SCAB_4541Putative sugar binding protein. (415 aa)    
Predicted Functional Partners:
SCAB_4531
Putative sugar transport integral membrane protein.
 
 
 0.983
msiK
Putative maltose/cellubiose ABC transporter ATP-binding subunit; PMID: 9068663; PMID: 7494485; Belongs to the ABC transporter superfamily.
  
 0.978
SCAB_4521
Putative integral membrane transport protein.
 
   
 0.969
SCAB_4511
Conserved hypothetical protein.
 
   
 0.923
SCAB_4551
Putative LacI-family transcriptional regulator.
 
  
 0.769
SCAB_4501
Putative secreted protein.
 
     0.757
CBG74703.1
Conserved hypothetical protein; PF07944 suggests possible glcosyl hydrolase function.
 
     0.734
CBG75852.1
Putative binding protein dependent transport protein.
 
 
 0.627
CBG72974.1
Putative 4-alpha-glucanotransferase.
  
  
 0.626
CBG69661.1
Conserved hypothetical protein.
 
     0.625
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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