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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBG71608.1Putative secreted glycosylase. (936 aa)    
Predicted Functional Partners:
CBG75393.1
Putative beta-fructosidase superfamily enzyme.
   
 0.745
CBG73602.1
Putative secreted glycosyl hydrolase; Belongs to the glycosyl hydrolase 43 family.
 
     0.696
CBG69078.1
Putatuve glycosysl hydrolase; Belongs to the glycosyl hydrolase 43 family.
 
     0.689
CBG73603.1
Putative arabinofuranosidase; PMID:10657233; Belongs to the glycosyl hydrolase 43 family.
 
     0.684
SCAB_6011
Putative glycosyl hydrolase/xylanase; Belongs to the glycosyl hydrolase 43 family.
 
   
 0.681
CBG74917.1
Putative secreted protein.
  
     0.625
SCAB_0581
Conserved hypothetical protein.
 
     0.621
SCAB_5761
Conserved hypothetical protein.
 
     0.621
SCAB_6471
Putative alpha-L-fucosidase.
  
     0.576
SCAB_9591
Putative alpha-L-fucosidase.
  
     0.558
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.