Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SCAB_4571Conserved hypothetical protein. (195 aa)    
Predicted Functional Partners:
CBG68533.1
Putative membrane protein.
 
     0.770
CBG75728.1
Conserved hypothetical protein.
 
     0.770
SCAB_7681
Conserved hypothetical protein.
  
     0.769
CBG71048.1
Putative secreted protein.
  
     0.753
CBG70856.1
Conserved hypothetical protein.
  
     0.749
CBG70849.1
Conserved hypothetical protein.
  
   
 0.747
CBG74735.1
Putative membrane protein.
  
     0.746
CBG69125.1
Putative phosphotransferase.
  
     0.736
SCAB_42841
Conserved hypothetical protein (fragment).
 
     0.729
CBG69638.1
Putative large Pro/Ala/Gly-rich protein.
  
    0.723
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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