Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CBG71656.1Putative transmembrane protein. (743 aa)    
Predicted Functional Partners:
CBG71655.1
Conserved hypothetical protein.
 
  
 0.890
CBG71657.1
Putative membrane protein.
 
     0.833
CBG71653.1
Putative membrane protein.
 
     0.787
CBG71658.1
Putative RNA nucleotidyltransferase; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
       0.697
CBG71612.1
Putative cell cycle protein; Belongs to the SEDS family.
 
   
 0.654
CBG71654.1
Putative sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
       0.632
CBG70062.1
Putative integral membrane cell-cycle protein; Belongs to the SEDS family.
 
   
 0.616
CBG73792.1
Putative cell wall biosynthesis protein.
 
   
 0.582
ruvC
Crossover junction endodeoxyribonuclease; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group.
 
  
 0.539
CBG69622.1
Putative sensory histidine kinase.
  
  
 0.519
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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