Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBG71665.1Conserved hypothetical protein. (373 aa)    
Predicted Functional Partners:
CBG71664.1
Conserved hypothetical protein.
 
   
 0.951
CBG70607.1
Putative peptidoglycan binding protein.
 
    0.775
CBG71666.1
Putative integral membrane protein.
       0.719
rpsF
Putative 30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
       0.643
ssb2
Putative single-strand DNA-binding protein.
       0.619
CBG70742.1
Putative secreted protein.
 
    0.603
rpsR1
Putative 30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.
       0.602
rplI
50S ribosomal protein L9; Binds to the 23S rRNA.
       0.600
CBG70180.1
Putative ATP-dependent DNA helicase; Belongs to the helicase family. UvrD subfamily.
 
     0.598
CBG72138.1
Putative integral membrane protein.
  
     0.564
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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